PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g04890
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 358aa    MW: 40007.6 Da    PI: 6.3879
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g04890genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00085189211123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  CA12g04890 189 YECKTCNRTFPSFQALGGHRASH 211
                 99**********99999998887 PP

2zf-C2H213.90.00016270292123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  CA12g04890 270 HECSYCGAEFTSGQALGGHMRRH 292
                 78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.43E-7188211No hitNo description
PfamPF139123.4E-13188213IPR007087Zinc finger, C2H2
SMARTSM003550.052189211IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658189216IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
SuperFamilySSF576674.43E-7265292No hitNo description
Gene3DG3DSA:3.30.160.604.5E-4268294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.2E-12270294IPR007087Zinc finger, C2H2
SMARTSM003550.0098270292IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.533270297IPR007087Zinc finger, C2H2
PROSITE patternPS000280272292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEALEEVVGG SSKDLFHIVK GKRTKRLRLQ SPNIPFSITS HDSLTACNNG NDNEACNVPS  60
SSNNNNNKTN IEDGSDNRDV VACINNNNIE SSSGNGEDIA CNNNINNNNN EILSSAASSE  120
AFINTFTEEE EETAKCLVLL SKSADDYHPR NVDFFNHDLR LYPTKFNSKR YIETSTNSID  180
GTKAGIYVYE CKTCNRTFPS FQALGGHRAS HKKPKTLHTE YNKKSYFDFS DEDDYQLHSP  240
STTTTTLYNK NKNMPNSSNN KYYSSSPRIH ECSYCGAEFT SGQALGGHMR RHRGGANVNS  300
PLYLSNLSPA TSIDHQEFGN NNNNVMKKQR DHELSLDLNL PVQDQEQTQR QLVDCHY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550427.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLM1D2E81e-146M1D2E8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000797731e-146(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-36C2H2 family protein